NEWS

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BDgraph 2.73 (2024-08-23)

• Function mse() is added to the package.

BDgraph 2.72 (2022-12-25)

• Function predict.bdgraph() is added to the package.

• Function posterior.predict() is added to the package.

• In functions bdgraph(), bdgraph.mpl(), and bdgraph.dw(), option g.prior is changed from 0.5 to 0.2.

BDgraph 2.71 (2022-12-12)

• Function auc() is added to the package.

• In function plotroc(), option calibrate is added.

• Data set churn is removed.

BDgraph 2.70 (2022-10-13)

• Bug fixed for plotroc() function.

• In function plotroc(), options color, typeline, size, xlab, and ylab, and some more options are added.

BDgraph 2.69 (2022-09-29)

• In function bdgraph.sim(), options type="t" and type="alternative-t" are added.

• In function bdgraph.sim(), option nu is added for the cases type="t" and type="alternative-t".

• Bug fixed for compare() function.

• In function compare(), option est is replaced.

• In function plotroc(), option est is replaced.

BDgraph 2.68 (2022-08-08)

• In functions bdgraph(), bdgraph.mpl(), and bdgraph.dw(), option verbose is added.

• In function plotcoda(), option verbose is added.

• A new file is added to the vignette of package.

• Bug fixed for bdgraph() function with option method = gcgm and algorithm = rj-dmh.

BDgraph 2.65 (2022-03-29)

• Function bdgraph.dw() is added to the package.

• Function bdw.reg() is added to the package.

• In functions graph.sim() and bdgraph.sim(), option graph = "smallworld" is added.

• In functions plot.graph() and plot.bdgraph(), options layout, vertex.size, vertex.color, and vertex.label.dist are added.

• In function bdgraph.sim(), options range.mu and range.dispersion are added.

BDgraph 2.64 (2021-05-03)

• Function roc() is added to the package.

• Function conf.mat() is added to the package.

• Function conf.mat.plot() is added to the package.

• Function sparsity() is added to the package.

• Functions ddweibull(), pdweibull(), qdweibull(), rdweibull() are added to the package.

BDgraph 2.63 (2020-08-26)

• In functions bdgraph(), bdgraph.mpl(), and bdgraph.ts(), option print is removed.

• In function bdgraph.sim(), option type="dw" is added.

• In function bdgraph.sim(), option type="discrete" is changed to type="count".

• Bug fixed for gnorm() function.

• README is added to the package.

BDgraph 2.62 (2019-12-05)

• Bug fixed related to the class function; class(.) == *

BDgraph 2.61 (2019-09-05)

• Bug fixed related to the C stack by Fortran functions.
• Function bf() is added to the package.
• Function adj2link() is added to the package.
• Function link2adj() is added to the package.
• Function bdgraph.ts() is removed.

BDgraph 2.60 (2019-08-08)

• Function precision() is added to the package.
• Function covariance() is added to the package.

BDgraph 2.58 (2019-04-15)

• Bug fixed for compare() function.

• Function get_graph() is added to the package and used inside function compare().

• Functions get_g_prior(), get_g_start(), get_S_n_p(), get_K_start(), and get_cores() are added to the package and used inside function bdgraph().

BDgraph 2.57 (2019-04-07)

• In function compare(), option est4 is added.

BDgraph 2.56 (2019-03-19)

• In functions rgwish(), rgcwish() and gnorm(), option adj.g is changed to adj.

• In function compare(), option sim.obj is changed to target.

• In function compare(), option bdgraph.obj is changed to est.

• In function compare(), option bdgraph.obj2 is changed to est2.

• In function compare(), option bdgraph.obj3 is changed to est3.

• In function plotroc(), option sim.obj is changed to target.

• In function plotroc(), option bdgraph.obj is changed to est.

• In function plotroc(), option bdgraph.obj2 is changed to est2.

• In function plotroc(), option bdgraph.obj3 is changed to est3.

• In function plotroc(), option bdgraph.obj4 is changed to est4.

• Bug fixed for bdgraph() function with option method = gcgm.

• Functions summary.bdgraph, plot.bdgraph, and print.bdgraph are modified.

BDgraph 2.53 (2018-11-14)

• Files configure and configure.ac are removed and files Makevars and Makevars.win are modified accordingly.

• In functions bdgraph(), bdgraph.mpl(), and bdgraph.ts(), option save.all is changed to save.

• In functions bdgraph() and bdgraph.mpl(), option multi.update is changed to jump.

• In functions bdgraph() and bdgraph.ts(), option prior.df is changed to df.prior.

• In function pgraph(), option adj_g is changed to adj.

BDgraph 2.52 (2018-10-03)

• Option threshold is added to function rgwish().

• Option threshold is added to function bdgraph().

• Option not.cont is added to function bdgraph().

• In function compare(), option colnames is changed to main.

• In functions bdgraph() and bdgraph.mpl(), option g.space is removed. Instead user can use option g.prior.

• Bug fixed for bdgraph.ts() function.

• Data set churn is added.

BDgraph 2.51 (2018-06-21)

• Bug fixed In functions rgwish() and rcgwish().
• vignette is added to the package.

BDgraph 2.47 (2018-04-25)

• Function graph.sim is added to the package.
• Function plot.graph is added to the package.

BDgraph 2.46 (2018-04-17)

• Function rmvnorm is added to the package.

BDgraph 2.44 (2018-01-05)

• Functions bdgraph.ts, rcwish, and rcgwish are added to the package.

BDgraph 2.42 (2017-11-06)

• Function local_rates_ggm_mpl in cpp is added for bdgraph.mpl function.
• configure and configure.ac are added to the package for Makevars file.
• Functions bdgraph.ts, rcwish, and rcgwish are removed from the package.

BDgraph 2.41 (2017-10-16)

• Option dgm-binary is added to function bdgraph() which is for running Hill-Climbing algorihtm for binary data.
• configure and configure.ac are added to configure checks of C++ codes.

BDgraph 2.40 (2017-08-14)

• Option g.prior is added to function bdgraph(), for prior distribution of the graph.
• Option cores is added to function bdgraph(), for determining the number of cores to use for parallel execution.
• Function transfer() is added to the package.

BDgraph 2.38 (2017-06-20)

• Function bdgraph.mpl() is added to the package, which is based on Marginal Pseudo-Likelihood estimation.
• In the algorithm gcgm, step copula are implimented in parallel using OpenMP in C++.
• Function bdgraph.ts is implimented in parallel using OpenMP in C++.
• New reference related to the ratio of normalizing constant is added to manual.

BDgraph 2.36 (2017-04-28)

• The BDMCMC algorithms are implimented in parallel using OpenMP in C++.

BDgraph 2.28 (2016-10-03)

• The Title in Description is changed.
• Functions bdgraph.ts(), rgcwish(), and rcwish() are added to the package.

BDgraph 2.24 (2015-11-18)

• Function phat() is changed to plinks().
• Function prob() is changed to pgraph().
• Function log_Ig() is changed to gnorm().

BDgraph 2.23 (2015-10-01)

• Function I.g() is chenged to log_Ig() and it is implemented in C++.

BDgraph 2.20 (2015-08-21)

• Reversible jump MCMC algorithm is added to the bdgraph() fonction.

BDgraph 2.19 (2015-06-16)

• The Title in Description is changed.
• Function I.g is added.